Signal peptide DNA alignment
Consensus Sequence: mammal, amrsupial, chicken
Pre-repeat DNA alignment
Prion DNA Alignment: Signal Peptide Region
atggcaaa ccttagctactggctgctggcactctttgtggctacgtggactgatgttggcctctgc
atggcaaa ccttggctgctggatgctagttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctactggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctactggctgctggccctctttgtgactacatgtactgatgttggcctctgc
atggcgaa ccttggctactggctgctggccctctttgtgactatgtggactgatgtcggcctctgc
atggcgaa ccttggctactggctgctggccctctttgtgactatgtggactgatgtcggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtaacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttgtctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttgtctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctgtttctctttgtggccacatggagtgacctgggcctctgc
atggcgaa ccttggctgctggatgctggttctctttgtggccacatggagtgacctgggcctctgc human
atggtgaaaagccacataggcagctggatcctagttctctttgtggccatgtggagtgacgtgggcctctgc
atggtgaaaagccacataggcagctggctcctggttctctttgtggccacatggagtgacattggcttctgc
atggtgaaaagccacataggcagttggatcctggtcctctttgtggccatgtggagtgacgtggccctctgc
atggtgaaaagccacataggcagttggatcctggttctctttgtggccatgtggagtgacgtgggcctctgc
atggtgaaaagccacataggcagttggatcctggttctctttgtggccatgtggagtgacgtgggcctctgc
atggtgaaaagccatataggtggctggatcctcgttctctttgtggccgcatggagtgacatagggctctgc
----m---------mm-m--mm-m-----m-------------------mm---------m-m--m------ marsupial resolves
atggtgaaaagccacataggcagctggatcctggttctctttgtggccatgtggagtgacgtgggcctctgc consensus eutherian
atgggaaaaatccaattgggatactggatcttggttctcttcattgttacctggagtgatctaggcctctgt marsupial signal
----xx----x---xx-x--xxx-------x----------xx-x-xx-xx--------xx-x--------x euth-marsup conflicts
----------t---ca----c-g-------c---------------cc-tg--------cg----------c chicken resolves
atggtgaaaatccacataggcagctggatcctggttctctttgtggccatgtggagtgacgtgggcctctgc consensus mammal
atggctaggctcctcaccacctgctgcctgctggccctgctgctcgccgcctgcaccgacgtcgccctctcc chicken signal
----xx-xxx---x--xxxx-x----xx-x----xx--xx-xx-x---xxx--x-xx-----x-------x-
chic/euth-marsup conflicts
M V K S H I G S W I L V L F V A M W S D V G L C consensus eutherian signal
M G K I Q L G Y W I L V L F I V T W S D L G L C marsupial signal
M V K I H I G S W I L V L F V A M W S D V G L C consensus mammal euth pref
M A R L L T T C C L L A L L L A A C T D V A L S chicken signal
MVKSHIGSWILVLFVAMWSDVGLCK consensus eutherian
MGKIQLGYWILVLFIVTWSDLGLCK marsupial signal
MVKIHIGSWILVLFVAMWSDVGLCK consensus mammal euth pref
MARLLTTCCLLALLLAACTDVALSK chicken signal
oppp---p-popoppop-poo-opo agreement, full,o and partial, p
Post-Signal, Pre-Repeat Prion DNA sequences
aagaagcgaccaaa-cctggagga-ggatggaacactggggggagccgatacccaggacagggcagtcctggaggcaaccgttatccacctcagggagggggt BTPRP
aagaagcgaccaaaacctggagga-ggatggaacactggggggagccgatacccgggacagggaagtcctggaggcaaccgctatccacctcagggagggggt OHU25965
aagaagcgaccaaaacctggcgga-ggatggaacactggggggagccgatacccgggacagggcagtcctggaggcaaccgctatccacctcagggagggggt CHPRIPR
aagaagcgaccaaagcctggcgga-ggatggaacactggggggagccgatacccagggcagggtagtcctggaggcaaccgctatccaccccagggagggggt PIGPRPG
aagaagcggcccaagcctggagga-ggctggaacactggggggagccgatacccagggcagggcagtcctggaggcaaccgctacccaccccagggtggtggc MPU08952
aagaagcggccgaagcctggagga-ggatggaacacaggggggagccggtacccgggtcagagcagccctggaggcaaccgctacccaccccagggcgg----cggctg OCU28334
aaaaagcggccaaagcctggagggtggaac----accggtggaagccggtatcccgggcagggaagccctggaggcaaccgttacccacctcagggtgg----cacctg MUSPRPA
aaaaagcggccaaagcctggagggtggaac----accggtggaagccggtatcccgggcagggaagccctggaggcaaccgttacccacctcagggtgg----cacctg MUSPRPB
aaaaagcggccaaagcctggagggtggaac----actggtggaagccggtaccctgggcagggaagccctggaggcaaccgttacccacctcagagtggtggt S69654
aagaagcgcccaaaacctggaggatggaat----actgggggcagccgatacccaggccagggcagccctggaggcaacctctacccaccacagggtggtggc CAU08295
aagaagcgcccaaaacctggaggatggaat----actgggggcagccgatacccaggccagggcagtcctggaggcaaccgctacccaccacagggtggtggc CJU08304
aagaagcgcccaaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MAU08311
aagaagcgcccaaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MFU08298
aagaagcgcccaaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MFU08301
aagaagcgcccaaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MMU08307
aagaagcgcccaaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MNU08306
aagaagcgcccaaagcctggaggatggaac----actgggggcagccgatacccggggcagggcagccctggaggcaaccgctacccacctcagggcggtggt PPU08305
aagaagcgcccgaaacctggaggatggaac----actgggggcagccgatacccaggccagggcagccctggaggcaaccgctacccaccccagggtggtggc APU15164
aagaagcgcccgaaacctggaggatggaat----actggggggagccgatacccaggccagggcagccctggaggcaaccgctacccaccccagggtggtggc SSU08310
aagaagcgcccgaagcccggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt CGU08297
aagaagcgcccgaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt CAU08291
aagaagcgcccgaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt CDU08292
aagaagcgcccgaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt MSU08303
aagaagcgcccgaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctacccaccccagggtggtggt PFU08302
aagaagcgcccgaagcctggaggatggaac----actggaggcagccgatacccggggcagggcagccctggaggcaaccgctatccaccccagggtggtggt PHU08294
aagaagcgcccgaagcctggaggatggaac----actgggggcagccgatacccggggcagggcagccctggaggcaaccgatacccacctcagggcggtggc HLU08299
aagaagcgcccgaagcctggaggatggaac----actgggggcagccgatacccggggcagggcagccctggaggcaaccgatacccacctcagggcggtggc SSU08308
aagaagcgcccgaagcctggaggatggaac----actgggggcagccgatacccggggcagggcagccctggaggcaaccgctacccacctcagggcggtggt GGU08300
aagaagcgcccgaagcctggaggatggaac----actgggggcagccgatacccggggcagggcagccctggaggcaaccgctacccacctcagggcggtggt PTU08296
aagaagcggccaaagcctggagggtggaac----actggtggaagccgataccctgggcagggcagccctggaggcaaccgttacccacctcagggtggtggc CRUPRPA
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aagaagggcaaaggcaaacccagtggtgggggttggggcgccgggagccatcgccagcccagctacccccgccagccgggctaccctcataacccagggtacc CHKPRION
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